PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29769.m000449
Common NameLOC8277861, RCOM_0763260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 417aa    MW: 46675.1 Da    PI: 4.6011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29769.m000449genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056172190523
                    TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                    +C+k F++ ++L rH  ++
  29769.m000449 172 HCDKKFNTAEELARHVVNC 190
                    7**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495997.52E-5197242IPR008974TRAF-like
PROSITE profilePS5014512.962209270IPR001293Zinc finger, TRAF-type
PfamPF021763.2E-12214272IPR001293Zinc finger, TRAF-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009941Cellular Componentchloroplast envelope
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEDVELVPEK EKIEDGKEGC PSFHCDLYDA EIVHKIAQVL LPGLAAACVD NTTGGIFRSP  60
ASVAVDLRKE MIDYLTQRSE SFVAESIILE DGPNTEVSDH PYDIIADFVD DFASSKRNFF  120
SRVSGWLLSE KREDNVDDFA QEMEINGFWL MDRRELVAQT LVKNVDFKNT FHCDKKFNTA  180
EELARHVVNC NFRSMNCRNE GCNAIFCASH LENHDSICPF KIIPCEQKCS DNIMRREMDR  240
HCITVCPMKL VNCPFYAVGC QSTIARHMIQ KHCSDDLQLH LVCALKNIHK GASEEDLKQR  300
VDQIVQSSSG QLDATRDARS LTLRVRDLDS KLGPLEANTA NKSSEEGTED PNHITYKPIE  360
AEADADAGNK DIEESYEDGN VGDGKPTNTT NKVGKESTET SNLTSHASEE AQTQVLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579063.10.0PREDICTED: uncharacterized protein LOC8277861 isoform X1
RefseqXP_015579062.10.0PREDICTED: uncharacterized protein LOC8277861 isoform X1
RefseqXP_002526183.10.0PREDICTED: uncharacterized protein LOC8277861 isoform X1
TrEMBLB9SJL40.0B9SJL4_RICCO; Putative uncharacterized protein
STRINGPOPTR_0016s06280.10.0(Populus trichocarpa)